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有读取噪音的鸟枪法测序中的近优装配
Near-optimal Assembly for Shotgun Sequencing with Noisy Reads
作者:Ka Kit Lam;David Tse;Asif Khalak 作者单位:University of California 加工时间:2014-03-17 信息来源:EECS 索取原文[24 页]
关键词:从头序列组装;基因组加工;新兴测序技术的方法
摘 要:In this work, we show that even when there is noise in the reads, one can successfully reconstruct with information requirements close to the noiseless fundamental limit. A new assembler, X-phased Multibridging, is designed based on a probabilistic model of the genome. It is shown through analysis to perform well on the model, and through simulations to perform well on real genomes.
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